From the Highlands to the high latitudes

Beautiful woodlands, bluebells in bloom, blue tit chicks hatching and growing and many exciting wildlife sightings across Scotland – a great way to spend the spring! I had a lovely field season collecting data on plant and bird phenology – I learned a lot, visited new places and had the chance to contribute to an exciting research project, led by Ally Phillimore. I loved spending time outdoors and really seeing spring arrive – leaf buds bursting and delicate new leaves emerging, whilst blue tits are dashing from branch to branch bringing in nesting material.

Along the many highlights of the field season was spotting a young fawn lying among a field of bluebells – there aren’t many fairy tales about field assistants checking nest boxes, but if one were to write such a story, it would certainly be set in an woodland just like this one.

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Science, outreach and coding galore in April

This April has been full to the brim with everything I love about science and academia – an art-science collaboration to give science outreach a creative spin, a conference to learn about cool research and meet new people, a coding workshop to spread our love for efficient coding practices and start new collaborations, a drone symposium to learn about the role of drone technology in advancing ecology, and finally fieldwork across beautiful woodlands in Scotland.

Team Shrub at the Edinburgh Science Festival

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I was very happy to help with the awesome outreach events Team Shrub organised for the Edinburgh International Science Festival. A great collaboration between scientists, science communicators (James Howie and the ASCUS Lab) and artists (Simon Sloan and Archie Crofton) resulted in a wonderful collection of photographs, data visualisations and fieldwork artifacts under the theme of “Arctic from Above” – Team Shrub’s first exhibition! You can still check out the exhibition in the Summerhall War Memorial Library before it closes on the 12th May!

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Graphic design tutorial (InDesign)

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Graphic design skills are a great addition to a scientist’s skills set, and making posters / slides / diagrams that are both informative and beautiful is super fun (and potentially a time sink if you get too carried away perfectly aligning images, but I think it makes a difference)!

Last week I lead a workshop for the Geoscience Outreach course on using Abode InDesign for science communication, and in particular, for making posters. As part of the assessment for the course and general promotion of outreach projects, students make a small poster that conveys the key messages of their outreach work.

What makes a good poster? We covered this topic by going on a beautification journey – first by looking at a poster from last year at different stages (bad, good, better), and then by working away on choosing colour schemes, layouts and making diagrams. The workshop was very fun, as usual I loved teaching, and I’m very happy to have contributed to the Geoscience Outreach course!

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How can we use Adobe InDesign to make beautiful and informative posters? Check out the tutorial online to find out!

Meta-analyses, theory and stylised facts in ecology

What is a theory? Is ecology theory-poor and if yes, why? What are the paths to theory development in ecology? Meta-analyses? Data syntheses? Big data? Stylised facts? These are the questions we set out to discuss during  this week’s lab meeting. We extended an invitation to EdGE (the EdEN discussion Group for Ecology) to get more diverse perspectives, and shared our thoughts on these topics, largely inspired by Dynamic Ecology’s posts about stylised facts in ecology and why meta-analyses in ecology often don’t lead to theoretical insight. We also added in Marquet et al.’s 2014 paper “On Theory in Ecology” into our discussion, bringing forward many thoughts on the different types of theory in ecology, and whether theory in ecology is possible to begin with.

We defined theory as a hierarchical framework of postulates, based on a number of assumptions, and leading to a set of predictions. As we set out to do our research, we can use theory as the base on which you build your hypotheses – and if you find enough support for your hypotheses, in time they might grow into a theory, thus prompting more hypotheses – a self-propelling cycle of gathering empirical evidence and developing theory. But is the cycle broken, with empirical evidence (or its synthesis) becoming an endpoint that prompts little theoretical insight?

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We had a mix of undergraduates, PhD students and PIs in the room, and it was interesting to see how our thoughts varied based on our career stage. We started off with a quick quiz on 1) whether we had heard of the theories covered in the paper before, and 2) whether we had thought deeply about them. Here are the results!

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Out of sight, out of mind

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My opinion piece on conservation issues in Australia’s Outback recently got published in the BIOSPHERE magazine! I first pondered Outback conservation challenges during the Conservation Science course I took in the last year of my degree, for which I wrote an opinion piece about the destructive effects of invasive species on marsupials such as the yellow-footed rock wallaby. Since I can’t resist the opportunity to make things look pretty and be more creative with scientific assignments, I made mine look like a magazine article – thanks to some great encouragement afterwards, telling me that my opinion piece could become a real magazine article, I decided to pursue this direction, and here it is!

You can read the opinion piece here.

How can we deliver conservation outcomes in areas that are out of sight and out of mind for so many? Recognising the importance of the communities that have always seen the value of the vast interior of Australia, and re-connecting them with their land, can empower people not only to identify environmental degradation, but also to actively engage in mitigating it.

The role of β-diversity in conservation

What indicators should we use in conservation? Why do different biodiversity indicators seem to disagree? What is the role of beta-diversity in conservation? This week we extended our usual TeamShrub lab meeting to hold a discussion on two recent biodiversity papers, as part of the EdEN (Edinburgh Ecology Network) EdGE (EdEN Discussion Group for Ecology) meetings. We talked about what are the best indicators to assess biodiversity change, whether there is a place for β-diversity metrics in guiding conservation actions, and why do different indicators of biodiversity change seem to disagree with one another.

We all had an interesting and jolly discussion, inspired by the following papers:

Socolar, Jacob B., et al. “How should beta-diversity inform biodiversity conservation?.” Trends in ecology & evolution 31.1 (2016): 67-80.

Hill, S. L.L., Harfoot, M., Purvis, A., Purves, D. W., Collen, B., Newbold, T., Burgess, N. D. and Mace, G. M. (2016), Reconciling Biodiversity Indicators to Guide Understanding and Action. CONSERVATION LETTERS, 9: 405–412. doi:10.1111/conl.12291

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As we work in the Arctic, we appreciated how the papers recognised the fact that regions which are not particularly rich in biodiversity still deserve to be on the conservation radar.

We started off by identifying what β-diversity is and how we measure it – we discussed temporal β-diversity (how has species composition changed through time) and spatial β-diversity (commonly known as just beta-diversity, how do communities differ across space – i.e. measures of similarities, etc.) and what are the implications of using β-diversity metrics in conservation. We can mostly agree that one of the goals of conservation is to maximise biodiversity, but what diversity? Alpha, beta, gamma?

Unlike α-diversity (diversity at the local scale) and γ-diversity (diversity at the global scale), β-diversity does not refer to a spatial extent, but to the comparison between communities, and as such is is often used as an indicator of biotic homogenisation.

Calculating β-diversity allows us to understand biodiversity loss from a different perspective – we can look beyond species richness increasing or decreasing, and think about whether communities are becoming more similar, and what the implications of that might be for ecosystem functionality and the provision of ecosystem services. Nevertheless, β-diversity has to be used carefully – if two communities are both changing, β-diversity might stay the same (i.e. they might still have the same amount of species in common), but their current species composition might have changed. We also discussed how increasing the spatial extent of agri-environment management (or other conservation measures) might not always have the desired outcomes – such actions might decrease β-diversity by favouring the same set of species over large spatial extents. Communities can shift in many ways, which don’t necessarily fit in the biodiversity loss toolbox we most often use.

Can we use beta-diversity to link local scale observations to global scale inferences on biodiversity trends?

We thought that this is theoretically a great idea, but logistically, there are difficulties in going from the local scale observations to inferences on γ-diversity – gaps in the data, understudied regions, etc. We also pondered the dangers of promoting rare species at the expense of common species, and also what about disturbance-tolerating species? It is easy to say that e.g. Plot1 has lost/gained one species, but hard to have confidence in how the world has changed over time. Perhaps it is β-diversity that will help us link our local-scale observations to inferences on the global scale.

2016 – adventures in Scotland, Bulgaria and Australia

img_01592016 was the year I really fell in love with science, research, and academia. I’ve always been a big fan of universities, but in 2016  I found out I not only like going to uni, I also don’t really want to leave it anytime soon. Having a very positive honours year and getting to do awesome fieldwork and RA work afterwards made me even more sure that I want to do a PhD. 2016 was also the first year for which I didn’t have a set plan – mostly because I was too busy to make one – but also because I wanted to become better at adapting to uncertainty (e.g. where will I live next month?) and change. Although I often felt like nothing is happening, except models running and running, 2016 was actually full of meaningful, challenging, and inspiring experiences!

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My BES Annual Meeting highlights (2016)

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Christmas did indeed arrive early – though I ate plenty of mince pies all through December, the real festive and jolly spirit didn’t hit me till the British Ecological Society Annual Meeting in Liverpool. 2016 was a great year for dreams coming true, one of them being presenting a talk at the BES conference. At the conference last year in Edinburgh, I thought that it is just so cool, and I made a wish to someday present myself. I tend to be rather impatient when it comes to achieving goals, this being probably the one time that I reached a target sooner than I thought I would. Continue reading “My BES Annual Meeting highlights (2016)”

Coding Club progress so far

2016 has been a great year for dreams coming true – one of them being getting the chance to teach! Back in November 2016, together with a great team of graduates, PhD and undergraduate students, and researchers, we launched Coding Club. Coding Club is a peer-to-peer learning community aiming to develop quantitative skills, in particular fluency in statistics and programming. Our goal is to turn statistics anxiety and code fear into motivation and inspiration, and we are working towards creating a supportive learning environment. Since it’s the start of a new year, and it is way too cold outside, I thought this would be a good time to reflect on our work so far.

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